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scBench Updates: Opus 4.7, GPT 5.5, Gemini 3.1
Benchmarking frontier models on messy, real-world single cell data analysis
May 12
•
Kenny Workman
89
April 2026
Agentic biology is shaped like software
Biology will not jump straight to autonomous AI scientists. Like software, it will first accelerate where work is executable, feedback-rich, and…
Apr 30
•
Kenny Workman
113
4
New Frontier Models Are Faster, Not More Reliable, at Spatial Biology
Overall accuracy for GPT-5.5 and Opus 4.7 remains flat on SpatialBench. Scientist-reviewed trajectories reveal persistent gaps in assay-aware biological…
Apr 29
•
Kenny Workman
,
Hannah Le
,
Zhen Yang
, and
Harihara Muralidharan
12
3
February 2026
scBench: Can AI Agents Analyze Real-World Single-Cell Data?
394 verifiable problems across six sequencing platforms: 10X Chromium, BD Rhapsody, CSGenetics, Illumina, MissionBio, ParseBio
Feb 6
•
Kenny Workman
24
December 2025
SpatialBench: Can Agents Analyze Real-World Spatial Biology Data?
first contribution towards a broader family of benchmarks spanning major data types // 146 verifiable problems spanning 5 spatial platforms and 7 task…
Dec 26, 2025
•
Kenny Workman
30
1
2
agent.bio
A public, interactive agent sandbox for five major spatial kit/machine types: Takara Seeker, Vizgen MERFISH, AtlasXOmics DBiT-seq, 10X Xenium + 10X…
Dec 9, 2025
•
Kenny Workman
and
Hannah Le
41
November 2025
SpatialBench: real world tasks for spatial agents
98 dataset/eval packs across 4 spatial technologies // test harness, open formats and examples available on GitHub // eval banks as structured…
Nov 13, 2025
•
Kenny Workman
37
1
1
October 2025
Agents for Spatial Biology
Tailored to Vizgen, 10X, AtlasXOmics, Takara. Powered by Anthropic.
Oct 28, 2025
•
Kenny Workman
,
Hannah Le
,
Harihara Muralidharan
, and
Zhen Yang
32
2
3
GDPR-Compliant Bioinformatics by Design
Patient rights and data integrity as defaults in an experimental analysis portal
Oct 14, 2025
•
Jordan Ramsay
31
September 2025
Forch: Bring-Your-Own-Compute on Latch
Motivation, design and deployment details of a new compute orchestrator
Sep 19, 2025
•
Max Smolin
26
A New Spatial Epigenomics Data Portal
New datasets available to explore the spatial epigenetic landscape // created by AtlasXOmics' DBit-seq technology
Sep 12, 2025
•
Hannah Le
9
25M Cell Human Spatial Atlas on Latch
25M spatial atlas for human anatomy // 45 tissue types, 63 diseases and 11 spatial technologies // white-labeled spatial portals for kit providers …
Sep 5, 2025
•
Hannah Le
,
Harihara Muralidharan
, and
Kenny Workman
5
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