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The Open Source Stack for Biological Imaging
A speedrun through scientific imaging tools, what each of them do, concrete scientific use cases and infrastructure principles.
Jan 29
•
Kenny Workman
11
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The Open Source Stack for Biological Imaging
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GPU peak calling for epigenetics
A deep dive on an important algorithm for ATAC/ChIP-seq analysis // an accelerated implementation with ~15x speed improvements
Jan 21
•
Kenny Workman
,
Harihara Muralidharan
, and
Brontë Kolar
7
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GPU peak calling for epigenetics
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How does arthritis actually work?
The immunology of rheumatoid arthritis. Tracing an experimental campaign, looking at current treatments and exploring mechanisms for new drugs.
Jan 20
•
Kenny Workman
7
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How does arthritis actually work?
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1
December 2024
You can now run single-cell experiments in a tube with 4.5 hours of hands-on time
A new and accessible single-cell sequencing technology and its impact on progress in biotech
Dec 26, 2024
•
Kenny Workman
8
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You can now run single-cell experiments in a tube with 4.5 hours of hands-on time
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Ask questions about your single cell data with natural language
An end-to-end single cell analysis workflow for bench scientists. Construct AnnData objects from S3 + Benchling. Automatic cell type annotation. Query…
Dec 12, 2024
•
Kenny Workman
and
Hannah Le
7
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Ask questions about your single cell data with natural language
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A Guide to Customer Analysis for Sequencing Kit Providers
Create bundles of analysis tools, distribute redeemable codes with kits, monitor analysis status and troubleshoot issues with customers
Dec 3, 2024
•
Kenny Workman
4
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A Guide to Customer Analysis for Sequencing Kit Providers
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November 2024
How to Engineer Therapeutic AAVs
exploring public viral packaging + biodistribution data from Dyno Tx // how to use scientific plots to answer important biological questions about…
Nov 14, 2024
•
Hannah Le
and
Zhen Yang
12
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How to Engineer Therapeutic AAVs
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Product Digest: Latch Plots, Protein Engineering and GPU-enabled Bioinformatics
a replacement for GraphPad Prism + Excel // an open conference for data infrastructure // a suite of molecular design tools for protein engineering …
Nov 13, 2024
•
LatchBio
8
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Product Digest: Latch Plots, Protein Engineering and GPU-enabled Bioinformatics
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Virtual Screening for New Antibiotics: A Machine Learning Approach to LpxC Inhibition
A computational search through 250,000 compounds for tomorrow's antibiotics against gram-negative bacteria
Nov 12, 2024
•
Brontë Kolar
13
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Virtual Screening for New Antibiotics: A Machine Learning Approach to LpxC Inhibition
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A new visualization software for biotech
Biologists need tools that keep pace with their demands for integration, transparency, and collaboration.
Nov 8, 2024
•
Hannah Le
and
Alfredo Andere
4
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A new visualization software for biotech
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GPU-enabled Bioinformatics
why bioinformatics will move to accelerated hardware // benchmarks for nf-core/methylseq on GPUs // collaborate on our assay roadmap
Nov 6, 2024
•
Kenny Workman
and
Harihara Muralidharan
8
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GPU-enabled Bioinformatics
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October 2024
How biotechs use software to make drugs
The realistic use of data infrastructure to develop a PCSK9 binding antibody from ideation to IND
Oct 30, 2024
•
Kenny Workman
13
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How biotechs use software to make drugs
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